Publicaciones en colaboración con investigadores/as de Stanford University (22)

2021

  1. DZip: Improved general-purpose loss less compression based on novel neural network modeling

    Data Compression Conference Proceedings

2020

  1. DZip: Improved general-purpose lossless compression based on novel neural network modeling

    Data Compression Conference Proceedings

2019

  1. Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0

    Nature Protocols, Vol. 14, Núm. 3, pp. 639-702

  2. DeepZip: Lossless Data Compression Using Recurrent Neural Networks

    Data Compression Conference Proceedings

  3. Denoising of Aligned Genomic Data

    Scientific Reports, Vol. 9, Núm. 1

  4. Genomic Data Compression

    Annual Review of Biomedical Data Science, Vol. 2, pp. 19-37

  5. SPRING: A next-generation compressor for FASTQ data

    Bioinformatics, Vol. 35, Núm. 15, pp. 2674-2676

2017

  1. Effect of lossy compression of quality scores on variant calling

    Briefings in Bioinformatics, Vol. 18, Núm. 2, pp. 183-194

  2. GeneComp, a New Reference-Based Compressor for SAM Files

    Data Compression Conference Proceedings

2016

  1. A Cluster-Based Approach to Compression of Quality Scores

    Data Compression Conference Proceedings

  2. CROMqs: An infinitesimal successive refinement lossy compressor for the quality scores

    2016 IEEE Information Theory Workshop, ITW 2016

  3. Comment on: 'ERGC: an efficient referential genome compression algorithm'

    Bioinformatics, Vol. 32, Núm. 7, pp. 1115-1117

  4. Denoising of Quality Scores for Boosted Inference and Reduced Storage

    Data Compression Conference Proceedings

  5. GTRAC: Fast retrieval from compressed collections of genomic variants

    Bioinformatics

2015

  1. IDoComp: A compression scheme for assembled genomes

    Bioinformatics, Vol. 31, Núm. 5, pp. 626-633

  2. QVZ: Lossy compression of quality values

    Bioinformatics, Vol. 31, Núm. 19, pp. 3122-3129

2014

  1. Aligned genomic data compression via improved modeling

    Journal of Bioinformatics and Computational Biology

  2. CaMoDi: A new method for cancer module discovery

    BMC Genomics, Vol. 15

  3. Compression schemes for similarity queries

    Data Compression Conference Proceedings

2013

  1. Efficient similarity queries via lossy compression

    2013 51st Annual Allerton Conference on Communication, Control, and Computing, Allerton 2013