Publications by the researcher in collaboration with Francisco Javier Planes Pedreño (14)

2022

  1. BOSO: A novel feature selection algorithm for linear regression with high-dimensional data

    PLoS Computational Biology, Vol. 18, Núm. 5

2021

  1. An extended reconstruction of human gut microbiota metabolism of dietary compounds

    Nature Communications, Vol. 12, Núm. 1

2020

  1. Drugsniper, a tool to exploit loss-of-function screens, identifies CREBBP as a predictive biomarker of VOLASERTIB in small cell lung carcinoma (SCLC)

    Cancers, Vol. 12, Núm. 7, pp. 1-18

2019

  1. TranscriptAchilles: A genome-wide platform to predict isoform biomarkers of gene essentiality in cancer

    GigaScience, Vol. 8, Núm. 4

2017

  1. In-silico gene essentiality analysis of polyamine biosynthesis reveals APRT as a potential target in cancer

    Scientific Reports, Vol. 7, Núm. 1

2015

  1. Advances in network-basedmetabolic pathway analysis and gene expression data integration

    Briefings in Bioinformatics, Vol. 16, Núm. 2, pp. 1-15

2014

  1. In-Silico prediction of key metabolic differences between two non-small cell lung cancer subtypes

    PLoS ONE, Vol. 9, Núm. 8

2013

  1. Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathways

    BMC Systems Biology, Vol. 7

  2. Joint analysis of miRNA andmRNA expression data

    Briefings in Bioinformatics, Vol. 14, Núm. 3, pp. 263-278

  3. Selection of human tissue-specific elementary flux modes using gene expression data

    Bioinformatics, Vol. 29, Núm. 16, pp. 2009-2016

2012

  1. Integrating tracer-based metabolomics data and metabolic fluxes in a linear fashion via Elementary Carbon Modes

    Metabolic Engineering, Vol. 14, Núm. 4, pp. 344-353

2011

  1. Do elementary flux modes combine linearly at the "atomic" level? Integrating tracer-based metabolomics data and elementary flux modes

    BioSystems, Vol. 105, Núm. 2, pp. 140-146

  2. Exploring the connectivity structure in metabolic networks: Going beyond graphs via discrete optimization

    IEEE Workshop on Statistical Signal Processing Proceedings

2009

  1. Computing the shortest elementary flux modes in genome-scale metabolic networks

    Bioinformatics, Vol. 25, Núm. 23, pp. 3158-3165