Idoia
Ochoa
Profesional Investigadora
Publications (54) Publications de Idoia Ochoa
2024
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Application of Graph Models to the Identification of Transcriptomic Oncometabolic Pathways in Human Hepatocellular Carcinoma
Biomolecules, Vol. 14, Núm. 6
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EMVC-2: an efficient single-nucleotide variant caller based on expectation maximization
Bioinformatics, Vol. 40, Núm. 3
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GeNNius: an ultrafast drug-target interaction inference method based on graph neural networks
Bioinformatics (Oxford, England), Vol. 40, Núm. 1
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Hybrid Time-Frequency Domain Architecture for Chipless RFID Readers
2024 IEEE INC-USNC-URSI Radio Science Meeting (Joint with AP-S Symposium), INC-USNC-URSI 2024 - Proceedings
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NetActivity enhances transcriptional signals by combining gene expression into robust gene set activity scores through interpretable autoencoders
Nucleic Acids Research, Vol. 52, Núm. 9, pp. e44
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Single-cell transcriptional profile of CD34+ hematopoietic progenitor cells from del(5q) myelodysplastic syndromes and impact of lenalidomide
Nature Communications, Vol. 15, Núm. 1
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Suitability of machine learning for atrophy and fibrosis development in neovascular age-related macular degeneration
Acta Ophthalmologica, Vol. 102, Núm. 5, pp. e831-e841
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Whole exome sequencing and machine learning germline analysis of individuals presenting with extreme phenotypes of high and low risk of developing tobacco-associated lung adenocarcinoma
eBioMedicine, Vol. 102
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gMCSpy: efficient and accurate computation of genetic minimal cut sets in Python
Bioinformatics, Vol. 40, Núm. 6
2023
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Analysis of Machine Learning Algorithms for USRP-based Smart Chipless RFID Readers
17th European Conference on Antennas and Propagation, EuCAP 2023
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Chipless RFID Tag Implementation and Machine-Learning Workflow for Robust Identification
IEEE Transactions on Microwave Theory and Techniques, Vol. 71, Núm. 12, pp. 5147-5159
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Chipless Wireless Sensor Coupled With Machine Learning for Oil Temperature Monitoring
IEEE Sensors Journal, Vol. 23, Núm. 18, pp. 21234-21245
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Phertilizer: Growing a clonal tree from ultra-low coverage single-cell DNA sequencing of tumors
PLoS Computational Biology, Vol. 19, Núm. 10
2022
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JIND: Joint integration and discrimination for automated single-cell annotation
Bioinformatics, Vol. 38, Núm. 9, pp. 2488-2495
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Nanopore quality score resolution can be reduced with little effect on downstream analysis
Bioinformatics Advances, Vol. 2, Núm. 1
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SimiC enables the inference of complex gene regulatory dynamics across cell phenotypes
Communications Biology, Vol. 5, Núm. 1
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Unsupervised ensemble learning for genome sequencing
Pattern Recognition, Vol. 129
2021
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DZip: Improved general-purpose loss less compression based on novel neural network modeling
Data Compression Conference Proceedings
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Moss enables high sensitivity single-nucleotide variant calling from multiple bulk DNA tumor samples
Nature Communications, Vol. 12, Núm. 1
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RENANO: A REference-based compressor for NANOpore FASTQ files
Bioinformatics, Vol. 37, Núm. 24, pp. 4862-4864