Mikel
Hernaez Arrazola
Profesional Investigador
University of Illinois at Urbana Champaign
Urbana, Estados UnidosPublicaciones en colaboración con investigadores/as de University of Illinois at Urbana Champaign (21)
2023
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Bayesian Machine Learning Enables Identification of Transcriptional Network Disruptions Associated with Drug-Resistant Prostate Cancer
Cancer research, Vol. 83, Núm. 8, pp. 1361-1380
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Single-cell dissection of aggression in honeybee colonies
Nature Ecology and Evolution, Vol. 7, Núm. 8, pp. 1232-1244
2022
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JIND: Joint integration and discrimination for automated single-cell annotation
Bioinformatics, Vol. 38, Núm. 9, pp. 2488-2495
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SimiC enables the inference of complex gene regulatory dynamics across cell phenotypes
Communications Biology, Vol. 5, Núm. 1
2021
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An Introduction to MPEG-G: The First Open ISO/IEC Standard for the Compression and Exchange of Genomic Sequencing Data
Proceedings of the IEEE, Vol. 109, Núm. 9, pp. 1607-1622
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Cellular plasticity balances the metabolic and proliferation dynamics of a regenerating liver
Genome Research, Vol. 31, Núm. 4, pp. 576-591
2020
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CROMqs: An infinitesimal successive refinement lossy compressor for the quality scores
Journal of Bioinformatics and Computational Biology, Vol. 18, Núm. 6
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Comparison of single and module-based methods for modeling gene regulatory networks
Bioinformatics, Vol. 36, Núm. 2, pp. 558-567
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GABAC: An arithmetic coding solution for genomic data
Bioinformatics, Vol. 36, Núm. 7, pp. 2275-2277
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GPress: A framework for querying general feature format (GFF) files and expression files in a compressed form
Bioinformatics, Vol. 36, Núm. 18, pp. 4810-4812
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Imaging-AMARETTO: An imaging genomics software tool to interrogate multiomics networks for relevance to radiography and histopathology imaging biomarkers of clinical outcomes
JCO Clinical Cancer Informatics, Vol. 4, pp. 421-435
2019
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AliCo: A New Efficient Representation for SAM Files
Data Compression Conference Proceedings
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Benchmark of long non-coding RNA quantification for RNA sequencing of cancer samples
GigaScience, Vol. 8, Núm. 12
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Cell-type specific polysome profiling from mammalian tissues
Methods, Vol. 155, pp. 131-139
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Denoising of Aligned Genomic Data
Scientific Reports, Vol. 9, Núm. 1
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Genomic Data Compression
Annual Review of Biomedical Data Science, Vol. 2, pp. 19-37
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SPRING: A next-generation compressor for FASTQ data
Bioinformatics, Vol. 35, Núm. 15, pp. 2674-2676
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SentIeon DNaSeq variant calling workflow demonstrates strong computational performance and accuracy
Frontiers in Genetics, Vol. 10, Núm. JUL
2018
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CALQ: Compression of quality values of aligned sequencing data
Bioinformatics, Vol. 34, Núm. 10, pp. 1650-1658
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FaStore: A space-saving solution for raw sequencing data
Bioinformatics, Vol. 34, Núm. 16, pp. 2748-2756