Publicacións en colaboración con investigadores/as de Stanford University (17)

2023

  1. Identifying key multifunctional components shared by critical cancer and normal liver pathways via SparseGMM

    Cell Reports Methods, Vol. 3, Núm. 1

2020

  1. Comparison of single and module-based methods for modeling gene regulatory networks

    Bioinformatics, Vol. 36, Núm. 2, pp. 558-567

2019

  1. Benchmark of long non-coding RNA quantification for RNA sequencing of cancer samples

    GigaScience, Vol. 8, Núm. 12

  2. Denoising of Aligned Genomic Data

    Scientific Reports, Vol. 9, Núm. 1

  3. Genomic Data Compression

    Annual Review of Biomedical Data Science, Vol. 2, pp. 19-37

  4. SPRING: A next-generation compressor for FASTQ data

    Bioinformatics, Vol. 35, Núm. 15, pp. 2674-2676

2017

  1. Effect of lossy compression of quality scores on variant calling

    Briefings in Bioinformatics, Vol. 18, Núm. 2, pp. 183-194

  2. GeneComp, a New Reference-Based Compressor for SAM Files

    Data Compression Conference Proceedings

2016

  1. A Cluster-Based Approach to Compression of Quality Scores

    Data Compression Conference Proceedings

  2. An Evaluation Framework for Lossy Compression of Genome Sequencing Quality Values

    Data Compression Conference Proceedings

  3. CROMqs: An infinitesimal successive refinement lossy compressor for the quality scores

    2016 IEEE Information Theory Workshop, ITW 2016

  4. Comment on: 'ERGC: an efficient referential genome compression algorithm'

    Bioinformatics, Vol. 32, Núm. 7, pp. 1115-1117

  5. Denoising of Quality Scores for Boosted Inference and Reduced Storage

    Data Compression Conference Proceedings

  6. GTRAC: Fast retrieval from compressed collections of genomic variants

    Bioinformatics

2015

  1. IDoComp: A compression scheme for assembled genomes

    Bioinformatics, Vol. 31, Núm. 5, pp. 626-633

  2. QVZ: Lossy compression of quality values

    Bioinformatics, Vol. 31, Núm. 19, pp. 3122-3129

2014

  1. Aligned genomic data compression via improved modeling

    Journal of Bioinformatics and Computational Biology