Publicaciones en las que colabora con Mikel Hernaez Arrazola (42)

2024

  1. Application of Graph Models to the Identification of Transcriptomic Oncometabolic Pathways in Human Hepatocellular Carcinoma

    Biomolecules, Vol. 14, Núm. 6

  2. GeNNius: an ultrafast drug-target interaction inference method based on graph neural networks

    Bioinformatics (Oxford, England), Vol. 40, Núm. 1

  3. Jind-Multi: An extended framework to leverage multiple labeled datasets for the automatic annotation of single-cell RNA and ATAC data

    Zenodo

  4. NetActivity enhances transcriptional signals by combining gene expression into robust gene set activity scores through interpretable autoencoders

    Nucleic Acids Research, Vol. 52, Núm. 9, pp. e44

  5. Single-cell transcriptional profile of CD34+ hematopoietic progenitor cells from del(5q) myelodysplastic syndromes and impact of lenalidomide

    Nature Communications, Vol. 15, Núm. 1

  6. Whole exome sequencing and machine learning germline analysis of individuals presenting with extreme phenotypes of high and low risk of developing tobacco-associated lung adenocarcinoma

    eBioMedicine, Vol. 102

2023

  1. Single-cell dissection of aggression in honeybee colonies

    Nature Ecology and Evolution, Vol. 7, Núm. 8, pp. 1232-1244

  2. Uncovering perturbations in human hematopoiesis associated with healthy aging and myeloid malignancies at single-cell resolution

    eLife, Vol. 12

2022

  1. CAR density influences antitumoral efficacy of BCMA CAR T cells and correlates with clinical outcome

    Science Advances, Vol. 8, Núm. 39

  2. JIND: Joint integration and discrimination for automated single-cell annotation

    Bioinformatics, Vol. 38, Núm. 9, pp. 2488-2495

  3. SimiC enables the inference of complex gene regulatory dynamics across cell phenotypes

    Communications Biology, Vol. 5, Núm. 1

  4. The transcription factor DDIT3 is a potential driver of dyserythropoiesis in myelodysplastic syndromes

    Nature Communications, Vol. 13, Núm. 1

2020

  1. CROMqs: An infinitesimal successive refinement lossy compressor for the quality scores

    Journal of Bioinformatics and Computational Biology, Vol. 18, Núm. 6

  2. GABAC: An arithmetic coding solution for genomic data

    Bioinformatics, Vol. 36, Núm. 7, pp. 2275-2277

  3. GPress: A framework for querying general feature format (GFF) files and expression files in a compressed form

    Bioinformatics, Vol. 36, Núm. 18, pp. 4810-4812

2019

  1. AliCo: A New Efficient Representation for SAM Files

    Data Compression Conference Proceedings

  2. Denoising of Aligned Genomic Data

    Scientific Reports, Vol. 9, Núm. 1

  3. Genomic Data Compression

    Annual Review of Biomedical Data Science, Vol. 2, pp. 19-37

  4. SPRING: A next-generation compressor for FASTQ data

    Bioinformatics, Vol. 35, Núm. 15, pp. 2674-2676

2018

  1. FaStore: A space-saving solution for raw sequencing data

    Bioinformatics, Vol. 34, Núm. 16, pp. 2748-2756