Publicaciones en las que colabora con Mikel Hernaez Arrazola (41)

2024

  1. GeNNius: an ultrafast drug-target interaction inference method based on graph neural networks

    Bioinformatics (Oxford, England), Vol. 40, Núm. 1

  2. NetActivity enhances transcriptional signals by combining gene expression into robust gene set activity scores through interpretable autoencoders

    Nucleic Acids Research, Vol. 52, Núm. 9, pp. e44

  3. Single-cell transcriptional profile of CD34+ hematopoietic progenitor cells from del(5q) myelodysplastic syndromes and impact of lenalidomide

    Nature Communications, Vol. 15, Núm. 1

  4. Whole exome sequencing and machine learning germline analysis of individuals presenting with extreme phenotypes of high and low risk of developing tobacco-associated lung adenocarcinoma

    eBioMedicine, Vol. 102

2023

  1. Single-cell dissection of aggression in honeybee colonies

    Nature Ecology and Evolution, Vol. 7, Núm. 8, pp. 1232-1244

  2. Uncovering perturbations in human hematopoiesis associated with healthy aging and myeloid malignancies at single-cell resolution

    eLife, Vol. 12

2022

  1. CAR density influences antitumoral efficacy of BCMA CAR T cells and correlates with clinical outcome

    Science Advances, Vol. 8, Núm. 39

  2. JIND: Joint integration and discrimination for automated single-cell annotation

    Bioinformatics, Vol. 38, Núm. 9, pp. 2488-2495

  3. SimiC enables the inference of complex gene regulatory dynamics across cell phenotypes

    Communications Biology, Vol. 5, Núm. 1

  4. The transcription factor DDIT3 is a potential driver of dyserythropoiesis in myelodysplastic syndromes

    Nature Communications, Vol. 13, Núm. 1

2020

  1. CROMqs: An infinitesimal successive refinement lossy compressor for the quality scores

    Journal of Bioinformatics and Computational Biology, Vol. 18, Núm. 6

  2. GABAC: An arithmetic coding solution for genomic data

    Bioinformatics, Vol. 36, Núm. 7, pp. 2275-2277

  3. GPress: A framework for querying general feature format (GFF) files and expression files in a compressed form

    Bioinformatics, Vol. 36, Núm. 18, pp. 4810-4812

2019

  1. AliCo: A New Efficient Representation for SAM Files

    Data Compression Conference Proceedings

  2. Denoising of Aligned Genomic Data

    Scientific Reports, Vol. 9, Núm. 1

  3. Genomic Data Compression

    Annual Review of Biomedical Data Science, Vol. 2, pp. 19-37

  4. SPRING: A next-generation compressor for FASTQ data

    Bioinformatics, Vol. 35, Núm. 15, pp. 2674-2676

2018

  1. FaStore: A space-saving solution for raw sequencing data

    Bioinformatics, Vol. 34, Núm. 16, pp. 2748-2756

2017

  1. Effect of lossy compression of quality scores on variant calling

    Briefings in Bioinformatics, Vol. 18, Núm. 2, pp. 183-194

  2. GeneComp, a New Reference-Based Compressor for SAM Files

    Data Compression Conference Proceedings