Publicaciones en colaboración con investigadores/as de University of Illinois at Urbana Champaign (21)

2023

  1. Bayesian Machine Learning Enables Identification of Transcriptional Network Disruptions Associated with Drug-Resistant Prostate Cancer

    Cancer research, Vol. 83, Núm. 8, pp. 1361-1380

  2. Single-cell dissection of aggression in honeybee colonies

    Nature Ecology and Evolution, Vol. 7, Núm. 8, pp. 1232-1244

2022

  1. JIND: Joint integration and discrimination for automated single-cell annotation

    Bioinformatics, Vol. 38, Núm. 9, pp. 2488-2495

  2. SimiC enables the inference of complex gene regulatory dynamics across cell phenotypes

    Communications Biology, Vol. 5, Núm. 1

2021

  1. An Introduction to MPEG-G: The First Open ISO/IEC Standard for the Compression and Exchange of Genomic Sequencing Data

    Proceedings of the IEEE, Vol. 109, Núm. 9, pp. 1607-1622

  2. Cellular plasticity balances the metabolic and proliferation dynamics of a regenerating liver

    Genome Research, Vol. 31, Núm. 4, pp. 576-591

2020

  1. CROMqs: An infinitesimal successive refinement lossy compressor for the quality scores

    Journal of Bioinformatics and Computational Biology, Vol. 18, Núm. 6

  2. Comparison of single and module-based methods for modeling gene regulatory networks

    Bioinformatics, Vol. 36, Núm. 2, pp. 558-567

  3. GABAC: An arithmetic coding solution for genomic data

    Bioinformatics, Vol. 36, Núm. 7, pp. 2275-2277

  4. GPress: A framework for querying general feature format (GFF) files and expression files in a compressed form

    Bioinformatics, Vol. 36, Núm. 18, pp. 4810-4812

  5. Imaging-AMARETTO: An imaging genomics software tool to interrogate multiomics networks for relevance to radiography and histopathology imaging biomarkers of clinical outcomes

    JCO Clinical Cancer Informatics, Vol. 4, pp. 421-435

2019

  1. AliCo: A New Efficient Representation for SAM Files

    Data Compression Conference Proceedings

  2. Benchmark of long non-coding RNA quantification for RNA sequencing of cancer samples

    GigaScience, Vol. 8, Núm. 12

  3. Cell-type specific polysome profiling from mammalian tissues

    Methods, Vol. 155, pp. 131-139

  4. Denoising of Aligned Genomic Data

    Scientific Reports, Vol. 9, Núm. 1

  5. Genomic Data Compression

    Annual Review of Biomedical Data Science, Vol. 2, pp. 19-37

  6. SPRING: A next-generation compressor for FASTQ data

    Bioinformatics, Vol. 35, Núm. 15, pp. 2674-2676

  7. SentIeon DNaSeq variant calling workflow demonstrates strong computational performance and accuracy

    Frontiers in Genetics, Vol. 10, Núm. JUL

2018

  1. CALQ: Compression of quality values of aligned sequencing data

    Bioinformatics, Vol. 34, Núm. 10, pp. 1650-1658

  2. FaStore: A space-saving solution for raw sequencing data

    Bioinformatics, Vol. 34, Núm. 16, pp. 2748-2756