Mikel Hernaez Arrazola-rekin lankidetzan egindako argitalpenak (29)

2024

  1. Application of Graph Models to the Identification of Transcriptomic Oncometabolic Pathways in Human Hepatocellular Carcinoma

    Biomolecules, Vol. 14, Núm. 6

  2. GeNNius: an ultrafast drug-target interaction inference method based on graph neural networks

    Bioinformatics (Oxford, England), Vol. 40, Núm. 1

  3. Jind-Multi: An extended framework to leverage multiple labeled datasets for the automatic annotation of single-cell RNA and ATAC data

    Zenodo

  4. NetActivity enhances transcriptional signals by combining gene expression into robust gene set activity scores through interpretable autoencoders

    Nucleic Acids Research, Vol. 52, Núm. 9, pp. e44

  5. Single-cell transcriptional profile of CD34+ hematopoietic progenitor cells from del(5q) myelodysplastic syndromes and impact of lenalidomide

    Nature Communications, Vol. 15, Núm. 1

  6. Whole exome sequencing and machine learning germline analysis of individuals presenting with extreme phenotypes of high and low risk of developing tobacco-associated lung adenocarcinoma

    eBioMedicine, Vol. 102

2022

  1. JIND: Joint integration and discrimination for automated single-cell annotation

    Bioinformatics, Vol. 38, Núm. 9, pp. 2488-2495

  2. SimiC enables the inference of complex gene regulatory dynamics across cell phenotypes

    Communications Biology, Vol. 5, Núm. 1

2020

  1. CROMqs: An infinitesimal successive refinement lossy compressor for the quality scores

    Journal of Bioinformatics and Computational Biology, Vol. 18, Núm. 6

  2. GABAC: An arithmetic coding solution for genomic data

    Bioinformatics, Vol. 36, Núm. 7, pp. 2275-2277

  3. GPress: A framework for querying general feature format (GFF) files and expression files in a compressed form

    Bioinformatics, Vol. 36, Núm. 18, pp. 4810-4812

2019

  1. AliCo: A New Efficient Representation for SAM Files

    Data Compression Conference Proceedings

  2. Denoising of Aligned Genomic Data

    Scientific Reports, Vol. 9, Núm. 1

  3. Genomic Data Compression

    Annual Review of Biomedical Data Science, Vol. 2, pp. 19-37

  4. SPRING: A next-generation compressor for FASTQ data

    Bioinformatics, Vol. 35, Núm. 15, pp. 2674-2676

2018

  1. FaStore: A space-saving solution for raw sequencing data

    Bioinformatics, Vol. 34, Núm. 16, pp. 2748-2756

2017

  1. Effect of lossy compression of quality scores on variant calling

    Briefings in Bioinformatics, Vol. 18, Núm. 2, pp. 183-194

  2. GeneComp, a New Reference-Based Compressor for SAM Files

    Data Compression Conference Proceedings

2016

  1. A Cluster-Based Approach to Compression of Quality Scores

    Data Compression Conference Proceedings

  2. CROMqs: An infinitesimal successive refinement lossy compressor for the quality scores

    2016 IEEE Information Theory Workshop, ITW 2016