Publications en collaboration avec des chercheurs de University of Illinois at Urbana Champaign (23)

2023

  1. Analysis of Machine Learning Algorithms for USRP-based Smart Chipless RFID Readers

    17th European Conference on Antennas and Propagation, EuCAP 2023

  2. Phertilizer: Growing a clonal tree from ultra-low coverage single-cell DNA sequencing of tumors

    PLoS Computational Biology, Vol. 19, Núm. 10

2022

  1. JIND: Joint integration and discrimination for automated single-cell annotation

    Bioinformatics, Vol. 38, Núm. 9, pp. 2488-2495

  2. Nanopore quality score resolution can be reduced with little effect on downstream analysis

    Bioinformatics Advances, Vol. 2, Núm. 1

  3. SimiC enables the inference of complex gene regulatory dynamics across cell phenotypes

    Communications Biology, Vol. 5, Núm. 1

2021

  1. DZip: Improved general-purpose loss less compression based on novel neural network modeling

    Data Compression Conference Proceedings

  2. Moss enables high sensitivity single-nucleotide variant calling from multiple bulk DNA tumor samples

    Nature Communications, Vol. 12, Núm. 1

  3. mspack: efficient lossless and lossy mass spectrometry data compression

    Bioinformatics, Vol. 37, Núm. 21, pp. 3923-3925

2020

  1. CROMqs: An infinitesimal successive refinement lossy compressor for the quality scores

    Journal of Bioinformatics and Computational Biology, Vol. 18, Núm. 6

  2. DZip: Improved general-purpose lossless compression based on novel neural network modeling

    Data Compression Conference Proceedings

  3. GABAC: An arithmetic coding solution for genomic data

    Bioinformatics, Vol. 36, Núm. 7, pp. 2275-2277

  4. GPress: A framework for querying general feature format (GFF) files and expression files in a compressed form

    Bioinformatics, Vol. 36, Núm. 18, pp. 4810-4812

  5. VEF: A variant filtering tool based on ensemble methods

    Bioinformatics, Vol. 36, Núm. 8, pp. 2328-2336

2019

  1. AliCo: A New Efficient Representation for SAM Files

    Data Compression Conference Proceedings

  2. Compression of Nanopore FASTQ Files

    Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

  3. DeepZip: Lossless Data Compression Using Recurrent Neural Networks

    Data Compression Conference Proceedings

  4. Denoising of Aligned Genomic Data

    Scientific Reports, Vol. 9, Núm. 1

  5. Genomic Data Compression

    Annual Review of Biomedical Data Science, Vol. 2, pp. 19-37

  6. MassComp, a lossless compressor for mass spectrometry data

    BMC Bioinformatics, Vol. 20, Núm. 1

  7. SPRING: A next-generation compressor for FASTQ data

    Bioinformatics, Vol. 35, Núm. 15, pp. 2674-2676