Publications in collaboration with researchers from University of Illinois at Urbana Champaign (51)

2024

  1. The effect of NAFTA on Mexico's wage gap

    Annals of Regional Science, Vol. 73, Núm. 3, pp. 1241-1267

2023

  1. Analysis of Machine Learning Algorithms for USRP-based Smart Chipless RFID Readers

    17th European Conference on Antennas and Propagation, EuCAP 2023

  2. Bayesian Machine Learning Enables Identification of Transcriptional Network Disruptions Associated with Drug-Resistant Prostate Cancer

    Cancer research, Vol. 83, Núm. 8, pp. 1361-1380

  3. Mechanical Thrombectomy Global Access for Stroke (MT-GLASS): A Mission Thrombectomy (MT-2020 Plus) Study

    Circulation, Vol. 147, Núm. 16, pp. 1208-1220

  4. Phertilizer: Growing a clonal tree from ultra-low coverage single-cell DNA sequencing of tumors

    PLoS Computational Biology, Vol. 19, Núm. 10

  5. Single-cell dissection of aggression in honeybee colonies

    Nature Ecology and Evolution, Vol. 7, Núm. 8, pp. 1232-1244

2022

  1. JIND: Joint integration and discrimination for automated single-cell annotation

    Bioinformatics, Vol. 38, Núm. 9, pp. 2488-2495

  2. Nanopore quality score resolution can be reduced with little effect on downstream analysis

    Bioinformatics Advances, Vol. 2, Núm. 1

  3. SimiC enables the inference of complex gene regulatory dynamics across cell phenotypes

    Communications Biology, Vol. 5, Núm. 1

2021

  1. An Introduction to MPEG-G: The First Open ISO/IEC Standard for the Compression and Exchange of Genomic Sequencing Data

    Proceedings of the IEEE, Vol. 109, Núm. 9, pp. 1607-1622

  2. Cellular plasticity balances the metabolic and proliferation dynamics of a regenerating liver

    Genome Research, Vol. 31, Núm. 4, pp. 576-591

  3. DZip: Improved general-purpose loss less compression based on novel neural network modeling

    Data Compression Conference Proceedings

  4. Moss enables high sensitivity single-nucleotide variant calling from multiple bulk DNA tumor samples

    Nature Communications, Vol. 12, Núm. 1

  5. mspack: efficient lossless and lossy mass spectrometry data compression

    Bioinformatics, Vol. 37, Núm. 21, pp. 3923-3925

2020

  1. CROMqs: An infinitesimal successive refinement lossy compressor for the quality scores

    Journal of Bioinformatics and Computational Biology, Vol. 18, Núm. 6

  2. Comparison of single and module-based methods for modeling gene regulatory networks

    Bioinformatics, Vol. 36, Núm. 2, pp. 558-567

  3. DZip: Improved general-purpose lossless compression based on novel neural network modeling

    Data Compression Conference Proceedings

  4. GABAC: An arithmetic coding solution for genomic data

    Bioinformatics, Vol. 36, Núm. 7, pp. 2275-2277

  5. GPress: A framework for querying general feature format (GFF) files and expression files in a compressed form

    Bioinformatics, Vol. 36, Núm. 18, pp. 4810-4812

  6. Imaging-AMARETTO: An imaging genomics software tool to interrogate multiomics networks for relevance to radiography and histopathology imaging biomarkers of clinical outcomes

    JCO Clinical Cancer Informatics, Vol. 4, pp. 421-435