Publications in collaboration with researchers from University of Illinois at Urbana Champaign (34)

2023

  1. Analysis of Machine Learning Algorithms for USRP-based Smart Chipless RFID Readers

    17th European Conference on Antennas and Propagation, EuCAP 2023

  2. Bayesian Machine Learning Enables Identification of Transcriptional Network Disruptions Associated with Drug-Resistant Prostate Cancer

    Cancer research, Vol. 83, Núm. 8, pp. 1361-1380

  3. Phertilizer: Growing a clonal tree from ultra-low coverage single-cell DNA sequencing of tumors

    PLoS Computational Biology, Vol. 19, Núm. 10

  4. Single-cell dissection of aggression in honeybee colonies

    Nature Ecology and Evolution, Vol. 7, Núm. 8, pp. 1232-1244

2022

  1. JIND: Joint integration and discrimination for automated single-cell annotation

    Bioinformatics, Vol. 38, Núm. 9, pp. 2488-2495

  2. Nanopore quality score resolution can be reduced with little effect on downstream analysis

    Bioinformatics Advances, Vol. 2, Núm. 1

  3. SimiC enables the inference of complex gene regulatory dynamics across cell phenotypes

    Communications Biology, Vol. 5, Núm. 1

2021

  1. An Introduction to MPEG-G: The First Open ISO/IEC Standard for the Compression and Exchange of Genomic Sequencing Data

    Proceedings of the IEEE, Vol. 109, Núm. 9, pp. 1607-1622

  2. Cellular plasticity balances the metabolic and proliferation dynamics of a regenerating liver

    Genome Research, Vol. 31, Núm. 4, pp. 576-591

  3. DZip: Improved general-purpose loss less compression based on novel neural network modeling

    Data Compression Conference Proceedings

  4. Moss enables high sensitivity single-nucleotide variant calling from multiple bulk DNA tumor samples

    Nature Communications, Vol. 12, Núm. 1

  5. mspack: efficient lossless and lossy mass spectrometry data compression

    Bioinformatics, Vol. 37, Núm. 21, pp. 3923-3925

2020

  1. CROMqs: An infinitesimal successive refinement lossy compressor for the quality scores

    Journal of Bioinformatics and Computational Biology, Vol. 18, Núm. 6

  2. Comparison of single and module-based methods for modeling gene regulatory networks

    Bioinformatics, Vol. 36, Núm. 2, pp. 558-567

  3. DZip: Improved general-purpose lossless compression based on novel neural network modeling

    Data Compression Conference Proceedings

  4. GABAC: An arithmetic coding solution for genomic data

    Bioinformatics, Vol. 36, Núm. 7, pp. 2275-2277

  5. GPress: A framework for querying general feature format (GFF) files and expression files in a compressed form

    Bioinformatics, Vol. 36, Núm. 18, pp. 4810-4812

  6. Imaging-AMARETTO: An imaging genomics software tool to interrogate multiomics networks for relevance to radiography and histopathology imaging biomarkers of clinical outcomes

    JCO Clinical Cancer Informatics, Vol. 4, pp. 421-435

  7. VEF: A variant filtering tool based on ensemble methods

    Bioinformatics, Vol. 36, Núm. 8, pp. 2328-2336

2019

  1. AliCo: A New Efficient Representation for SAM Files

    Data Compression Conference Proceedings